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Update url addresses to new orga and solve some issues #88

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merged 40 commits into from
Mar 13, 2024
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auzaheta
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Description

It is a patch change.
This fixes issues with the opportunities list and compositional change collisions, printing when fixing parameters, and a bug when using the preprocess init object. The configure.ac file is simplified to only check for OpenMP availability. The installation from the source prints the state of the OpenMP configuration used for Goldfish during compilation.

Fixes #85
Closes #83
Fixes #86
Fixes #87

Checklist:

  • I have added tests that prove my fix is effective or that my feature works
  • The package builds on my OS without issues (please add workstation details)
  • My changes generate no new warnings
  • My code follows the style guidelines of this project
  • I have commented my coon de, particularly in hard-to-understand areas
  • I have made corresponding changes to the documentation (.R, NEWS.md)
  • I have bumped the version by the appropriate increment in the DESCRIPTION file (major, minor, patch)

Merge branch 'develop' into feature_simulation

# Conflicts:
#	R/functions_estimation.R
#	R/functions_preprocessing.R
#	R/goldfish-package.R
Merge branch 'develop' into feature_simulation

# Conflicts:
#	DESCRIPTION
#	NEWS.md
Merge branch 'develop' into feature_gather

# Conflicts:
#	DESCRIPTION
#	NAMESPACE
#	NEWS.md
#	R/functions_estimation.R
#	R/functions_estimation_engine.R
#	R/functions_estimation_engine_c.r
#	R/functions_gather.R
#	R/functions_preprocessing.R
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@marion-hoffman marion-hoffman left a comment

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I checked whether the opportunitieslist option worked on the previous problematic examples and it works fine again!
Also I tried the prepocessingInit and summary with fixed parameters and it also seems to work.
I have not tested in detail but at least the bugs I had noticed are no longer there.
Thanks a lot for the great work

@jhollway
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Can't test (on the train), but looks good @auzaheta . Thank you for the work and happy to confirm it if you also send it CRAN.

@auzaheta auzaheta merged commit a9bb161 into main Mar 13, 2024
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